HL_4W29_116

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4W29|1|CA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_116 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.3302

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4W29|1|CA|G|259
4W29|1|CA|G|260
4W29|1|CA|U|261
4W29|1|CA|A|262
4W29|1|CA|A|263
4W29|1|CA|U|264
4W29|1|CA|G|265
4W29|1|CA|G|266
4W29|1|CA|C|267

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CQ

30S ribosomal protein S17

Chain CT

30S ribosomal protein S20