HL_4W29_121

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4W29|1|CA|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_121 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.2265

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

4W29|1|CA|C|419
4W29|1|CA|U|420
4W29|1|CA|U|421
4W29|1|CA|C|422
4W29|1|CA|G|423
4W29|1|CA|G|424

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CV

mRNA