HL_4W29_137

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_137 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.2094

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4W29|1|CA|C|1165
4W29|1|CA|G|1166
4W29|1|CA|A|1167
4W29|1|CA|A|1169
4W29|1|CA|A|1170
4W29|1|CA|G|1171

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CG

30S ribosomal protein S7