HL_4W29_148
3D structure
- PDB id
- 4W29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUCGAUCC
- Length
- 9 nucleotides
- Bulged bases
- 4W29|1|CX|U|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4W29_148 not in the Motif Atlas
- Homologous match to HL_6ORD_037
- Geometric discrepancy: 0.5656
- The information below is about HL_6ORD_037
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 143
Unit IDs
4W29|1|CX|G|53
4W29|1|CX|U|54
4W29|1|CX|U|55
4W29|1|CX|C|56
4W29|1|CX|G|57
4W29|1|CX|A|58
4W29|1|CX|U|59
4W29|1|CX|C|60
4W29|1|CX|C|61
Current chains
- Chain CX
- tRNA
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S ribosomal protein L5
- Chain DQ
- 50S ribosomal protein L16
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