HL_4W29_150

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_150 not in the Motif Atlas

Homologous match to HL_4WF9_002

Geometric discrepancy: 0.4464

The information below is about HL_4WF9_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_77600.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4W29|1|DA|C|87
4W29|1|DA|G|88
4W29|1|DA|G|89
4W29|1|DA|U|90
4W29|1|DA|A|91
4W29|1|DA|G|92
4W29|1|DA|C|93
4W29|1|DA|G|94
4W29|1|DA|G|95

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L29

Chain DX

50S ribosomal protein L23

Chain DY

50S ribosomal protein L24