HL_4W29_182

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4W29|1|DA|G|1325, 4W29|1|DA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_182 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.2069

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

4W29|1|DA|G|1324
4W29|1|DA|G|1325
4W29|1|DA|U|1326
4W29|1|DA|C|1327
4W29|1|DA|G|1328
4W29|1|DA|U|1329
4W29|1|DA|C|1330

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DR

50S ribosomal protein L17

Chain DW

50S ribosomal protein L22