HL_4W29_184

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4W29|1|DA|U|1396, 4W29|1|DA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_184 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.3056

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4W29|1|DA|G|1389
4W29|1|DA|U|1390
4W29|1|DA|U|1391
4W29|1|DA|A|1392
4W29|1|DA|A|1393
4W29|1|DA|U|1394
4W29|1|DA|A|1395
4W29|1|DA|U|1396
4W29|1|DA|U|1397
4W29|1|DA|C|1398

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DX

50S ribosomal protein L23