3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CCAUGGACGAG
Length
11 nucleotides
Bulged bases
4W29|1|DA|U|1454, 4W29|1|DA|A|1460
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4W29_185 not in the Motif Atlas
Homologous match to HL_7A0S_036
Geometric discrepancy: 0.4836
The information below is about HL_7A0S_036
Detailed Annotation
Pseudoknot
Broad Annotation
No text annotation
Motif group
HL_93135.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
1

Unit IDs

4W29|1|DA|C|1450
4W29|1|DA|C|1452
4W29|1|DA|A|1453
4W29|1|DA|U|1454
4W29|1|DA|G|1455
4W29|1|DA|G|1456
4W29|1|DA|A|1457
4W29|1|DA|C|1458
4W29|1|DA|G|1459
4W29|1|DA|A|1460
4W29|1|DA|G|1461

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain DR
50S ribosomal protein L17

Coloring options:


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