HL_4W29_189

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4W29|1|DA|A|1614, 4W29|1|DA|A|1616, 4W29|1|DA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_189 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1788

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4W29|1|DA|C|1612
4W29|1|DA|G|1613
4W29|1|DA|A|1614
4W29|1|DA|C|1615
4W29|1|DA|A|1616
4W29|1|DA|C|1617
4W29|1|DA|A|1618
4W29|1|DA|G|1619

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DW

50S ribosomal protein L22