HL_4W29_215

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4W29|1|DA|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_215 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.2323

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.1

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

6

Unit IDs

4W29|1|DA|C|2745
4W29|1|DA|U|2746
4W29|1|DA|G|2747
4W29|1|DA|A|2748
4W29|1|DA|A|2749
4W29|1|DA|A|2750
4W29|1|DA|G|2751
4W29|1|DA|C|2752
4W29|1|DA|A|2753
4W29|1|DA|U|2754
4W29|1|DA|C|2755
4W29|1|DA|U|2756
4W29|1|DA|A|2757
4W29|1|DA|A|2758
4W29|1|DA|G|2759

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D9

50S ribosomal protein L36

Chain DH

50S ribosomal protein L6

Chain DN

50S ribosomal protein L13