HL_4W2F_078

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

4W2F|1|BA|C|1539, 4W2F|1|BA|U|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_078 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.0749

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

4W2F|1|BA|G|1538
4W2F|1|BA|C|1539
4W2F|1|BA|A|1540
4W2F|1|BA|A|1541
4W2F|1|BA|A|1542
4W2F|1|BA|U|1543
4W2F|1|BA|C|1544

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BD

50S Ribosomal Protein L2