HL_4W2F_161

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4W2F|1|DA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_161 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0739

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4W2F|1|DA|U|305
4W2F|1|DA|U|306
4W2F|1|DA|G|307
4W2F|1|DA|G|308
4W2F|1|DA|G|309
4W2F|1|DA|A|310
4W2F|1|DA|A|311
4W2F|1|DA|G|312

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DY

50S Ribosomal Protein L24