HL_4W2F_172

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4W2F|1|DA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_172 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.258

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4W2F|1|DA|C|641
4W2F|1|DA|G|642
4W2F|1|DA|A|643
4W2F|1|DA|A|644
4W2F|1|DA|C|645
4W2F|1|DA|A|646
4W2F|1|DA|G|647

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D6

50S Ribosomal Protein L33

Chain D8

50S Ribosomal Protein L35

Chain DP

50S Ribosomal Protein L15