HL_4W2F_183

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4W2F|1|DA|G|1325, 4W2F|1|DA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_183 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.0571

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

4W2F|1|DA|G|1324
4W2F|1|DA|G|1325
4W2F|1|DA|U|1326
4W2F|1|DA|C|1327
4W2F|1|DA|G|1328
4W2F|1|DA|U|1329
4W2F|1|DA|C|1330

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DR

50S Ribosomal Protein L17

Chain DW

50S Ribosomal Protein L22