HL_4W2F_198
3D structure
- PDB id
- 4W2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 4W2F|1|DA|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4W2F_198 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.151
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4W2F|1|DA|G|1910
4W2F|1|DA|U|1911
4W2F|1|DA|A|1912
4W2F|1|DA|A|1913
4W2F|1|DA|C|1914
4W2F|1|DA|U|1915
4W2F|1|DA|A|1916
4W2F|1|DA|U|1917
4W2F|1|DA|A|1918
4W2F|1|DA|A|1919
4W2F|1|DA|C|1920
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CV
- mRNA
- Chain CW
- Transfer RNA; tRNA
- Chain CX
- Transfer RNA; tRNA
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