HL_4W2F_211

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

4W2F|1|DA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_211 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.0989

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

4W2F|1|DA|U|2528
4W2F|1|DA|G|2529
4W2F|1|DA|A|2530
4W2F|1|DA|A|2531
4W2F|1|DA|G|2532
4W2F|1|DA|A|2533
4W2F|1|DA|A|2534
4W2F|1|DA|G|2535

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D9

50S Ribosomal Protein L36

Chain DH

50S Ribosomal Protein L6