HL_4W2F_225

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_225 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.2978

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4W2F|1|BA|G|1137
4W2F|1|BA|C|1138
4W2F|1|BA|G|1139
4W2F|1|BA|U|1140
4W2F|1|BA|A|1141
4W2F|1|BA|A|1142
4W2F|1|BA|U|1143
4W2F|1|BA|A|1144
4W2F|1|BA|G|1145
4W2F|1|BA|C|1146

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B9

50S Ribosomal Protein L36

Chain BH

50S Ribosomal Protein L6