3D structure

PDB id
4W2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GUGAGAAUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4W2G_072 not in the Motif Atlas
Homologous match to HL_7RQB_033
Geometric discrepancy: 0.0482
The information below is about HL_7RQB_033
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41998.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
69

Unit IDs

4W2G|1|BA|G|1327
4W2G|1|BA|U|1328
4W2G|1|BA|G|1329
4W2G|1|BA|A|1330
4W2G|1|BA|G|1331
4W2G|1|BA|A|1332
4W2G|1|BA|A|1333
4W2G|1|BA|U|1334
4W2G|1|BA|C|1335

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain BR
50S Ribosomal Protein L17
Chain BW
50S Ribosomal Protein L22

Coloring options:


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