HL_4W2G_131

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

4W2G|1|CA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2G_131 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.113

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4W2G|1|CA|G|963
4W2G|1|CA|A|964
4W2G|1|CA|A|965
4W2G|1|CA|G|966
4W2G|1|CA|C|967
4W2G|1|CA|A|968
4W2G|1|CA|A|969
4W2G|1|CA|C|970
4W2G|1|CA|G|971
4W2G|1|CA|C|972

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CI

30S Ribosomal Protein S9

Chain CJ

30S Ribosomal Protein S10

Chain CM

30S Ribosomal Protein S13

Chain CN

30S Ribosomal Protein S14

Chain CW

Transfer RNA; tRNA

Chain CX

Transfer RNA; tRNA