HL_4W2G_225

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGGAAACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2G_225 not in the Motif Atlas

Homologous match to HL_6CZR_215

Geometric discrepancy: 0.2008

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4W2G|1|CA|G|157
4W2G|1|CA|G|158
4W2G|1|CA|G|159
4W2G|1|CA|A|160
4W2G|1|CA|A|161
4W2G|1|CA|A|162
4W2G|1|CA|C|163
4W2G|1|CA|U|164

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CT

30S Ribosomal Protein S20