HL_4W2G_226

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2G_226 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.1959

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4W2G|1|CA|G|1164
4W2G|1|CA|C|1165
4W2G|1|CA|G|1166
4W2G|1|CA|A|1168
4W2G|1|CA|A|1169
4W2G|1|CA|A|1170
4W2G|1|CA|G|1171
4W2G|1|CA|C|1172

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S Ribosomal Protein S2