HL_4W2H_068

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4W2H|1|BA|G|1371, 4W2H|1|BA|U|1375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_068 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.0577

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

4W2H|1|BA|G|1370
4W2H|1|BA|G|1371
4W2H|1|BA|U|1372
4W2H|1|BA|C|1373
4W2H|1|BA|G|1374
4W2H|1|BA|U|1375
4W2H|1|BA|C|1376

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BR

50S Ribosomal Protein L17

Chain BW

50S Ribosomal Protein L22