HL_4W2H_085

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4W2H|1|BA|A|2052, 4W2H|1|BA|A|2053, 4W2H|1|BA|G|2054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_085 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0424

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4W2H|1|BA|G|2049
4W2H|1|BA|U|2050
4W2H|1|BA|G|2051
4W2H|1|BA|A|2052
4W2H|1|BA|A|2053
4W2H|1|BA|G|2054
4W2H|1|BA|A|2055
4W2H|1|BA|U|2056
4W2H|1|BA|G|2057
4W2H|1|BA|C|2058

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B5

50S Ribosomal Protein L32

Chain BE

50S Ribosomal Protein L3

Chain BV

50S Ribosomal Protein L21