HL_4W2H_148

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

4W2H|1|DA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_148 not in the Motif Atlas

Homologous match to HL_7RQB_007

Geometric discrepancy: 0.1552

The information below is about HL_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02862.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4W2H|1|DA|A|225
4W2H|1|DA|G|226
4W2H|1|DA|A|227
4W2H|1|DA|A|228
4W2H|1|DA|A|229
4W2H|1|DA|U|230

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DP

50S Ribosomal Protein L15