HL_4W2H_190

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4W2H|1|DA|A|2030, 4W2H|1|DA|A|2031, 4W2H|1|DA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_190 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0737

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4W2H|1|DA|G|2027
4W2H|1|DA|U|2028
4W2H|1|DA|G|2029
4W2H|1|DA|A|2030
4W2H|1|DA|A|2031
4W2H|1|DA|G|2032
4W2H|1|DA|A|2033
4W2H|1|DA|U|2034
4W2H|1|DA|G|2035
4W2H|1|DA|C|2036

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D5

50S Ribosomal Protein L32

Chain DE

50S Ribosomal Protein L3

Chain DV

50S Ribosomal Protein L21