HL_4W2H_193

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4W2H|1|DA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_193 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.0988

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

4W2H|1|DA|C|2248
4W2H|1|DA|U|2249
4W2H|1|DA|G|2250
4W2H|1|DA|G|2251
4W2H|1|DA|G|2252
4W2H|1|DA|G|2253
4W2H|1|DA|C|2254
4W2H|1|DA|G|2255
4W2H|1|DA|G|2256

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CX

Transfer RNA; tRNA

Chain D0

50S Ribosomal Protein L27

Chain DQ

50S Ribosomal Protein L16