HL_4W2H_195

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_195 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.2853

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4W2H|1|DA|G|2302
4W2H|1|DA|G|2303
4W2H|1|DA|G|2304
4W2H|1|DA|A|2305
4W2H|1|DA|C|2306
4W2H|1|DA|G|2307
4W2H|1|DA|G|2308
4W2H|1|DA|A|2309
4W2H|1|DA|A|2310
4W2H|1|DA|A|2311
4W2H|1|DA|U|2312
4W2H|1|DA|C|2313
4W2H|1|DA|C|2314

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S Ribosomal Protein L5