HL_4W2H_197

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_197 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.0693

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

4W2H|1|DA|C|2355
4W2H|1|DA|C|2356
4W2H|1|DA|U|2357
4W2H|1|DA|G|2358
4W2H|1|DA|C|2359
4W2H|1|DA|A|2360
4W2H|1|DA|A|2361
4W2H|1|DA|G|2362

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D0

50S Ribosomal Protein L27

Chain D8

50S Ribosomal Protein L35

Chain DP

50S Ribosomal Protein L15