HL_4W2H_216

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_216 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.0935

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4W2H|1|BA|G|2316
4W2H|1|BA|A|2317
4W2H|1|BA|C|2318
4W2H|1|BA|G|2319
4W2H|1|BA|G|2320
4W2H|1|BA|A|2321
4W2H|1|BA|A|2322
4W2H|1|BA|A|2323
4W2H|1|BA|U|2324

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BG

50S Ribosomal Protein L5