HL_4W2I_050

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4W2I|1|BA|A|335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2I_050 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0536

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4W2I|1|BA|U|329
4W2I|1|BA|U|330
4W2I|1|BA|G|331
4W2I|1|BA|G|332
4W2I|1|BA|G|333
4W2I|1|BA|A|334
4W2I|1|BA|A|335
4W2I|1|BA|G|336

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BY

50S Ribosomal Protein L24