HL_4W2I_067

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4W2I|1|BA|U|1003, 4W2I|1|BA|C|1006

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2I_067 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.0534

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4W2I|1|BA|C|1000
4W2I|1|BA|G|1001
4W2I|1|BA|A|1002
4W2I|1|BA|U|1003
4W2I|1|BA|A|1004
4W2I|1|BA|A|1005
4W2I|1|BA|C|1006
4W2I|1|BA|G|1007

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BQ

50S Ribosomal Protein L16