HL_4W2I_179

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4W2I|1|DA|U|958, 4W2I|1|DA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2I_179 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.0913

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4W2I|1|DA|C|955
4W2I|1|DA|G|956
4W2I|1|DA|A|957
4W2I|1|DA|U|958
4W2I|1|DA|A|959
4W2I|1|DA|A|960
4W2I|1|DA|C|961
4W2I|1|DA|G|962

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DQ

50S Ribosomal Protein L16