HL_4W2I_205

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4W2I|1|DA|A|2268, 4W2I|1|DA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2I_205 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.084

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4W2I|1|DA|C|2264
4W2I|1|DA|U|2265
4W2I|1|DA|A|2266
4W2I|1|DA|A|2267
4W2I|1|DA|A|2268
4W2I|1|DA|A|2269
4W2I|1|DA|G|2270
4W2I|1|DA|G|2271
4W2I|1|DA|U|2272
4W2I|1|DA|A|2273
4W2I|1|DA|A|2274
4W2I|1|DA|C|2275
4W2I|1|DA|G|2276

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D0

50S Ribosomal Protein L27

Chain DQ

50S Ribosomal Protein L16