HL_4W4G_091

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4W4G|1|RA|G|2210, 4W4G|1|RA|G|2211, 4W4G|1|RA|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W4G_091 not in the Motif Atlas

Homologous match to HL_7RQB_052

Geometric discrepancy: 0.4747

The information below is about HL_7RQB_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98426.1

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4W4G|1|RA|C|2209
4W4G|1|RA|G|2210
4W4G|1|RA|G|2211
4W4G|1|RA|A|2212
4W4G|1|RA|U|2213
4W4G|1|RA|G|2215

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RD

50S ribosomal protein L2