HL_4W4G_116

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4W4G|1|XA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W4G_116 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.065

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4W4G|1|XA|G|259
4W4G|1|XA|G|260
4W4G|1|XA|U|261
4W4G|1|XA|A|262
4W4G|1|XA|A|263
4W4G|1|XA|U|264
4W4G|1|XA|G|265
4W4G|1|XA|G|266
4W4G|1|XA|C|267

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XQ

30S ribosomal protein S17

Chain XT

30S ribosomal protein S20