3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CAAGAG
Length
6 nucleotides
Bulged bases
4W4G|1|YA|A|1634
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4W4G_189 not in the Motif Atlas
Homologous match to HL_7RQB_041
Geometric discrepancy: 0.0852
The information below is about HL_7RQB_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01057.2
Basepair signature
cWW
Number of instances in this motif group
5

Unit IDs

4W4G|1|YA|C|1630|||A
4W4G|1|YA|A|1631
4W4G|1|YA|A|1632
4W4G|1|YA|G|1633
4W4G|1|YA|A|1634
4W4G|1|YA|G|1635

Current chains

Chain YA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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