HL_4W4G_198

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4W4G|1|YA|A|2030, 4W4G|1|YA|A|2031, 4W4G|1|YA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W4G_198 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0811

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4W4G|1|YA|G|2027
4W4G|1|YA|U|2028
4W4G|1|YA|G|2029
4W4G|1|YA|A|2030
4W4G|1|YA|A|2031
4W4G|1|YA|G|2032
4W4G|1|YA|A|2033
4W4G|1|YA|U|2034
4W4G|1|YA|G|2035
4W4G|1|YA|C|2036

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y5

50S ribosomal protein L32

Chain YE

50S ribosomal protein L3

Chain YV

50S ribosomal protein L21