3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GUGAAGAUGC
Length
10 nucleotides
Bulged bases
4W4G|1|YA|A|2030, 4W4G|1|YA|A|2031, 4W4G|1|YA|G|2032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4W4G_198 not in the Motif Atlas
Homologous match to HL_7RQB_050
Geometric discrepancy: 0.0811
The information below is about HL_7RQB_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_90642.6
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
6

Unit IDs

4W4G|1|YA|G|2027
4W4G|1|YA|U|2028
4W4G|1|YA|G|2029
4W4G|1|YA|A|2030
4W4G|1|YA|A|2031
4W4G|1|YA|G|2032
4W4G|1|YA|A|2033
4W4G|1|YA|U|2034
4W4G|1|YA|G|2035
4W4G|1|YA|C|2036

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y5
50S ribosomal protein L32
Chain YE
50S ribosomal protein L3
Chain YV
50S ribosomal protein L21

Coloring options:


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