HL_4W4G_202

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4W4G|1|YA|A|2268, 4W4G|1|YA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W4G_202 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0617

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4W4G|1|YA|C|2264
4W4G|1|YA|U|2265
4W4G|1|YA|A|2266
4W4G|1|YA|A|2267
4W4G|1|YA|A|2268
4W4G|1|YA|A|2269
4W4G|1|YA|G|2270
4W4G|1|YA|G|2271
4W4G|1|YA|U|2272
4W4G|1|YA|A|2273
4W4G|1|YA|A|2274
4W4G|1|YA|C|2275
4W4G|1|YA|G|2276

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain YQ

50S ribosomal protein L16