HL_4WC6_001

3D structure

PDB id

4WC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tRNA-processing enzyme complex 4

Experimental method

X-RAY DIFFRACTION

Resolution

3.41 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

4WC6|1|B|U|16, 4WC6|1|B|U|17, 4WC6|1|B|G|18, 4WC6|1|B|G|19, 4WC6|1|B|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WC6_001 not in the Motif Atlas

Homologous match to HL_6ORD_035

Geometric discrepancy: 0.2174

The information below is about HL_6ORD_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07951.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4WC6|1|B|C|13
4WC6|1|B|A|14
4WC6|1|B|G|15
4WC6|1|B|U|16
4WC6|1|B|U|17
4WC6|1|B|G|18
4WC6|1|B|G|19
4WC6|1|B|U|20
4WC6|1|B|A|21
4WC6|1|B|G|22

Current chains

Chain B

RNA (75-mer)

Nearby chains

Chain A

Poly A polymerase