HL_4WCE_012

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

4WCE|1|X|A|372, 4WCE|1|X|A|373, 4WCE|1|X|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WCE_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0697

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4WCE|1|X|G|370
4WCE|1|X|U|371
4WCE|1|X|A|372
4WCE|1|X|A|373
4WCE|1|X|U|374
4WCE|1|X|A|375
4WCE|1|X|A|376
4WCE|1|X|U|377
4WCE|1|X|C|378

Current chains

Chain X

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24