HL_4WCE_013

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

AGCACGUGAAAUU

Length

13 nucleotides

Bulged bases

4WCE|1|X|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WCE_013 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.1457

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WCE|1|X|A|427
4WCE|1|X|G|428
4WCE|1|X|C|429
4WCE|1|X|A|430
4WCE|1|X|C|431
4WCE|1|X|G|432
4WCE|1|X|U|433
4WCE|1|X|G|434
4WCE|1|X|A|435
4WCE|1|X|A|436
4WCE|1|X|A|437
4WCE|1|X|U|438
4WCE|1|X|U|439

Current chains

Chain X

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L28