HL_4WCE_014

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4WCE|1|X|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WCE_014 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.0902

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4WCE|1|X|G|456
4WCE|1|X|G|457
4WCE|1|X|A|458
4WCE|1|X|C|459
4WCE|1|X|C|460
4WCE|1|X|A|461
4WCE|1|X|U|462
4WCE|1|X|C|463

Current chains

Chain X

23S rRNA

Nearby chains