HL_4WCE_019

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CAGUAAAUG

Length

9 nucleotides

Bulged bases

4WCE|1|X|U|657, 4WCE|1|X|A|658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WCE_019 not in the Motif Atlas

Homologous match to HL_4WF9_019

Geometric discrepancy: 0.3002

The information below is about HL_4WF9_019

Detailed Annotation

Other HL

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

4WCE|1|X|C|654
4WCE|1|X|A|655
4WCE|1|X|G|656
4WCE|1|X|U|657
4WCE|1|X|A|658
4WCE|1|X|A|659
4WCE|1|X|A|660
4WCE|1|X|U|661
4WCE|1|X|G|662

Current chains

Chain X

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L4