HL_4WCE_032

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WCE_032 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.0717

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

4WCE|1|X|G|1318
4WCE|1|X|U|1319
4WCE|1|X|G|1320
4WCE|1|X|A|1321
4WCE|1|X|G|1322
4WCE|1|X|A|1323
4WCE|1|X|A|1324
4WCE|1|X|U|1325
4WCE|1|X|C|1326

Current chains

Chain X

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22