Motif HL_33597.6 Version HL_33597.6 of this group appears in releases 4.10 to 4.12

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9	1-9	2-6
1	HL_8GLP_033	8GLP	0.3407	0	T-loop with 2 stacked bulged bases	L5	LSU rRNA	A	2376	C	2377	G	2378	A	2379	G	2380	A	2381	A	2382	C	2383	U	2384	cWW	tWH
2	HL_9H3G_035	9H3G	0.2853	0		A	LSU rRNA	A	1471	PSU	1472	G	1473	A	1474	G	1475	A	1476	A	1477	OMC	1478	U	1479	cWW	tWH
3	HL_9AXU_028	9AXU	0.3284	0	T-loop with 2 stacked bulged bases	2	LSU rRNA	A	1496	U	1497	G	1498	A	1499	G	1500	A	1501	A	1502	C	1503	U	1504	cWW	tWH
4	HL_9PN5_030	9PN5	0.3161	0		A1	LSU rRNA	A	1462	U	1463	G	1464	A	1465	G	1466	A	1467	A	1468	C	1469	U	1470	cWW	tWH
5	HL_8OI5_027	8OI5	0.3170	0	T-loop with 2 stacked bulged bases	1	LSU rRNA	A	1458	U	1459	G	1460	A	1461	G	1462	A	1463	A	1464	C	1465	U	1466	cWW	tWH
6	HL_8B0X_060	8B0X	0.3198	0	T-loop with 2 stacked bulged bases	a	LSU rRNA	G	1283	U	1284	G	1285	A	1286	A	1287	A	1288	A	1289	G	1290	C	1291	cWW	tWH
7	HL_4V9F_034	4V9F	0.3654	0	T-loop with 2 stacked bulged bases	0	LSU rRNA	G	1387	U	1388	G	1389	A	1390	G	1391	A	1392	A	1393	C	1394	C	1395	cWW	tWH
8	HL_9DFE_031	9DFE	0.2703	0	T-loop with 2 stacked bulged bases	1A	LSU rRNA	G	1281	U	1282	G	1283	A	1284	G	1285	A	1286	A	1287	U	1288	C	1289	cWW	tWH
9	HL_4WF9_032	4WF9	0.3083	0	T-loop with 2 stacked bulged bases	X	LSU rRNA	G	1318	U	1319	G	1320	A	1321	G	1322	A	1323	A	1324	U	1325	C	1326	cWW	tWH
10	HL_7A0S_032	7A0S	0.2903	0	T-loop with 2 stacked bulged bases	X	LSU rRNA	G	1294	U	1295	G	1296	A	1297	G	1298	A	1299	A	1300	U	1301	C	1302	cWW	tWH
11	HL_9E6Q_031	9E6Q	0.2705	0	T-loop with 2 stacked bulged bases	1	LSU rRNA	G	1409	U	1410	G	1411	A	1412	G	1413	A	1414	A	1415	G	1416	C	1417	cWW	tWH
12	HL_8V1I_006	8V1I	0.3661	0	T-loop with 2 stacked bulged bases	B	MALAT1-associated small cytoplasmic RNA/MEN beta RNA	G	38	U	39	U	40	C	41	A	42	A	43	A	44	U	45	C	46	cWW	tWH
13	HL_5Y85_003	5Y85	0.2255	0	T-loop with 2 stacked bulged bases	D	DNA/RNA (50-MER)	G	11	U	12	G	13	C	14	A	15	A	16	G	17	U	18	C	19	cWW	tWH
14	HL_5T5A_001	5T5A	0.2815	0	T-loop with 2 stacked bulged bases	A	DNA/RNA (71-MER)	G	21	U	22	G	23	C	24	A	25	A	26	G	27	C	28	C	29	cWW	tWH
15	HL_8B0X_048	8B0X	0.3073	1	T-loop with 2 stacked bulged bases	a	LSU rRNA	U	568	U	569	U	570	U	571	G	572	U	573	A	574	U	575	A	577	cWW
16	HL_4WF9_018	4WF9	0.3073	1	T-loop with 2 stacked bulged bases	X	LSU rRNA	U	609	U	610	U	611	U	612	G	613	U	614	A	615	G	616	A	618	cWW
17	HL_9DFE_016	9DFE	0.3484	1	T-loop with 2 stacked bulged bases	1A	LSU rRNA	U	566	A	567	U	568	U	569	G	570	A	571	A	572	G	573	A	575	cWW
18	HL_7A0S_018	7A0S	0.3341	1	T-loop with 2 stacked bulged bases	X	LSU rRNA	U	575	A	576	U	577	U	578	G	579	A	580	A	581	G	582	A	584	cWW
19	HL_9H3G_020	9H3G	0.3183	1		A	LSU rRNA	U	652	C	653	U	654	U	655	G	656	1MA	657	A	658	A	659	A2M	661	cWW
20	HL_8GLP_119	8GLP	0.3113	1	T-loop with 2 stacked bulged bases	L5	LSU rRNA	U	1317	C	1318	U	1319	U	1320	G	1321	1MA	1322	A	1323	A	1324	A2M	1326	cWW
21	HL_9PN5_014	9PN5	0.3067	1		A1	LSU rRNA	U	640	C	641	U	642	U	643	G	644	1MA	645	A	646	A	647	A	649	cWW
22	HL_9AXU_013	9AXU	0.3168	1	T-loop with 2 stacked bulged bases	2	LSU rRNA	U	665	C	666	U	667	U	668	G	669	A	670	A	671	A	672	A	674	cWW
23	HL_8OI5_013	8OI5	0.3268	1	T-loop with 2 stacked bulged bases	1	LSU rRNA	U	638	C	639	U	640	U	641	G	642	A	643	A	644	A	645	A	647	cWW
24	HL_9E6Q_018	9E6Q	0.3139	1	T-loop with 2 stacked bulged bases	1	LSU rRNA	U	647	C	648	U	649	A	650	G	651	A	652	A	653	A	654	A	656	cWW
25	HL_4V9F_018	4V9F	0.2709	1	T-loop with 2 stacked bulged bases	0	LSU rRNA	U	623	U	624	U	625	U	626	G	627	1MA	628	A	629	A	630	A	632	cWW	ntWH
26	HL_1J2B_002	1J2B	0.2615	0	T-loop with 2 stacked bulged bases	C	tRNA	G	954	U	955	U	956	C	957	A	958	A	959	G	960	U	961	C	962	cWW	tWH
27	HL_2CSX_003	2CSX	0.2001	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
28	HL_8SP9_004	8SP9	0.1671	0	T-loop with 2 stacked bulged bases	C	Enterovirus 5' cloverleaf cis-acting replication element	G	130	U	131	U	132	C	133	A	134	A	135	G	136	U	137	C	138	cWW	ntWH
29	HL_4V8Q_110	4V8Q	0.1711	0	T-loop with 2 stacked bulged bases	BY	tmRNA	G	66	U	67	U	68	C	69	G	70	A	71	C	72	U	73	C	74	cWW	ntWH
30	HL_3WFS_003	3WFS	0.1809	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
31	HL_3AMU_003	3AMU	0.1609	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
32	HL_1WZ2_008	1WZ2	0.1489	0	T-loop with 2 stacked bulged bases	D	tRNA	G	965	U	966	U	967	C	968	G	969	A	970	A	971	U	972	C	973	cWW	tWH
33	HL_8WND_005	8WND	0.1332	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
34	HL_8Z1P_002	8Z1P	0.1226	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
35	HL_2BTE_008	2BTE	0.1163	0	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
36	HL_4V9Q_215	4V9Q	0.1256	0	T-loop with 2 stacked bulged bases	DV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
37	HL_4WT8_217	4WT8	0.1243	0	T-loop with 2 stacked bulged bases	D4	tRNA	G	54	U	55	U	56	C	57	A	58	A	59	A	60	U	61	C	62	cWW	tWH
38	HL_8V1H_002	8V1H	0.2996	0	T-loop with 2 stacked bulged bases	A	MALAT1-associated small cytoplasmic RNA/MEN beta RNA	G	38	U	39	U	40	C	41	A	42	A	43	A	44	U	45	C	46	cWW	tWH
39	HL_8S95_005	8S95	0.1230	0	T-loop with 2 stacked bulged bases	C	Enterovirus 5' cloverleaf cis-acting replication element	G	133	U	134	U	135	C	136	A	137	A	138	G	139	U	140	C	141	cWW	tWH
40	HL_7UQ6_003	7UQ6	0.1262	0	T-loop with 2 stacked bulged bases	B	tRNA	G	64	U	65	U	66	C	67	G	68	A	69	G	70	U	71	C	72	cWW	tWH
41	HL_7YSE_003	7YSE	0.1257	0	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
42	HL_6PMO_005	6PMO	0.0956	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
43	HL_1QU2_003	1QU2	0.1074	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
44	HL_4P5J_003	4P5J	0.1485	0	T-loop with 2 stacked bulged bases	A	tRNA-like 3' UTR element	G	46	U	47	G	48	C	49	A	50	A	51	C	52	U	53	C	54	cWW	tWH
45	HL_6MJ0_004	6MJ0	0.1292	0	T-loop with 2 stacked bulged bases	A	tRNA-like 3' UTR element	G	66	U	67	G	68	C	69	A	70	A	71	C	72	U	73	C	74	cWW	tWH
46	HL_5WT1_003	5WT1	0.1186	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
47	HL_4YCP_003	4YCP	0.1236	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
48	HL_8B0X_032	8B0X	0.1096	0	T-loop with 2 stacked bulged bases	Z	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
49	HL_8K0Y_002	8K0Y	0.1323	0	T-loop with 2 stacked bulged bases	A	MALAT1-associated small cytoplasmic RNA/MEN beta RNA	G	37	U	38	U	39	C	40	A	41	A	42	U	43	U	44	C	45	cWW	tWH
50	HL_2ZZM_004	2ZZM	0.1025	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
51	HL_5X6B_003	5X6B	0.1152	0	T-loop with 2 stacked bulged bases	P	tRNA	G	52	U	53	U	54	C	55	A	56	A	57	A	58	U	59	C	60	cWW	tWH
52	HL_2ZUE_003	2ZUE	0.1104	0	T-loop with 2 stacked bulged bases	B	tRNA	G	953	U	954	U	955	C	956	A	957	A	958	A	959	U	960	C	961	cWW	tWH
53	HL_7KJT_003	7KJT	0.1108	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
54	HL_6UFM_003	6UFM	0.1013	0	T-loop with 2 stacked bulged bases	A	tRNA	G	54	U	55	U	56	C	57	G	58	A	59	G	60	U	61	C	62	cWW	tWH
55	HL_4RDX_003	4RDX	0.0929	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
56	HL_3WQY_003	3WQY	0.1001	0	T-loop with 2 stacked bulged bases	C	tRNA	G	1653	U	1654	U	1655	C	1656	A	1657	A	1658	A	1659	U	1660	C	1661	cWW	tWH
57	HL_2ZZN_006	2ZZN	0.1095	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
58	HL_7LYF_003	7LYF	0.1099	0	T-loop with 2 stacked bulged bases	A	Dengue virus SLA	G	116	U	117	U	118	C	119	A	120	A	121	G	122	U	123	C	124	cWW	tWH
59	HL_8UO6_004	8UO6	0.1000	0	T-loop with 2 stacked bulged bases	A	HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold	G	111	U	112	U	113	C	114	A	115	A	116	G	117	U	118	C	119	cWW	tWH
60	HL_8UO6_008	8UO6	0.0989	0	T-loop with 2 stacked bulged bases	B	HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold	G	111	U	112	U	113	C	114	A	115	A	116	G	117	U	118	C	119	cWW	tWH
61	HL_7E8O_003	7E8O	0.1002	0	T-loop with 2 stacked bulged bases	X	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
62	HL_1QTQ_003	1QTQ	0.0786	0	T-loop with 2 stacked bulged bases	B	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
63	HL_5HR6_003	5HR6	0.0730	0	T-loop with 2 stacked bulged bases	C	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
64	HL_5HR7_006	5HR7	0.0644	0	T-loop with 2 stacked bulged bases	D	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
65	HL_4YYE_003	4YYE	0.0000	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
66	HL_8VU0_003	8VU0	0.0727	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
67	HL_5AH5_008	5AH5	0.0872	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
68	HL_9J4O_003	9J4O	0.0925	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
69	HL_4JXZ_003	4JXZ	0.0862	0	T-loop with 2 stacked bulged bases	B	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
70	HL_1J1U_003	1J1U	0.0920	0	T-loop with 2 stacked bulged bases	B	tRNA	G	554	U	555	U	556	C	557	A	558	A	559	A	560	U	561	C	562	cWW	tWH
71	HL_4YCO_003	4YCO	0.0852	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
72	HL_5AXM_003	5AXM	0.0875	0	T-loop with 2 stacked bulged bases	P	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
73	HL_7MRL_003	7MRL	0.0835	0	T-loop with 2 stacked bulged bases	A	tRNA	G	56	U	57	U	58	C	59	A	60	A	61	G	62	U	63	C	64	cWW	tWH
74	HL_6UGG_006	6UGG	0.0715	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
75	HL_9MTS_103	9MTS	0.0835	0	T-loop with 2 stacked bulged bases	1x	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
76	HL_4WJ4_003	4WJ4	0.1242	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
77	HL_9J5P_004	9J5P	0.0963	0	T-loop with 2 stacked bulged bases	A	tRNA	G	66	U	67	U	68	C	69	A	70	A	71	G	72	U	73	C	74	cWW	tWH
78	HL_8G9Z_004	8G9Z	0.1100	0	T-loop with 2 stacked bulged bases	E	Selenocysteine transfer RNA	G	53\|\|A	U	54\|\|A	U	55\|\|A	C	56\|\|A	A	57\|\|A	A	58\|\|A	U	59\|\|A	U	60\|\|A	C	61\|\|A	cWW	tWH
79	HL_2DER_006	2DER	0.1882	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
80	HL_3FOZ_006	3FOZ	0.1949	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
81	HL_4X4V_001	4X4V	0.1636	0	T-loop with 2 stacked bulged bases	B	Human MenBeta minihelix ending in CCACC	G	12	U	13	U	14	C	15	G	16	A	17	G	18	U	19	C	20	cWW	tWH
82	HL_2DU3_003	2DU3	0.1367	0	T-loop with 2 stacked bulged bases	D	tRNA	G	952	U	953	U	954	C	955	G	956	A	957	A	958	U	959	C	960	cWW	tWH
83	HL_3RG5_008	3RG5	0.1285	0	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	A	57	A	58	U	59	U	60	C	61	cWW	tWH
84	HL_6JXM_003	6JXM	0.1144	0	T-loop with 2 stacked bulged bases	B	tRNA	G	74	U	75	U	76	C	77	G	78	A	79	G	80	U	81	C	82	cWW	tWH
85	HL_9O3W_079	9O3W	0.1524	0	T-loop with 2 stacked bulged bases (H)	Pt	tRNA	G	52	U	53	2MU	54	PSU	55	G	56	A	57	U	58	U	59	C	60	cWW	tWH
86	HL_3ZGZ_003	3ZGZ	0.1120	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
87	HL_4LCK_003	4LCK	0.1344	0	T-loop with 2 stacked bulged bases	B	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
88	HL_3W3S_004	3W3S	0.1592	0	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
89	HL_3ADD_004	3ADD	0.1813	0	T-loop with 2 stacked bulged bases	C	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	A	57	A	58	U	59	U	60	C	61	cWW	tWH
90	HL_5WWT_002	5WWT	0.1869	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
91	HL_4MGN_004	4MGN	0.1806	0	T-loop with 2 stacked bulged bases	B	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	G	58	U	59	C	60	cWW	tWH
92	HL_9SFQ_004	9SFQ	0.1338	0	T-loop with 2 stacked bulged bases	T	tRNA	G	63	A1I9V	64	PSU	65	C	66	G	67	1MA	68	A	69	U	70	C	71	cWW	tWH
93	HL_4GCW_002	4GCW	0.1377	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	C	60	C	61	cWW	tWH
94	HL_6CU1_001	6CU1	0.1633	0	T-loop with 2 stacked bulged bases	A	Y RNA-like	G	24	U	25	U	26	C	27	G	28	A	29	G	30	A	31	C	32	cWW	tWH
95	HL_7K98_003	7K98	0.1331	0	T-loop with 2 stacked bulged bases	C	tRNA	G	54	U	55	U	56	C	57	G	58	A	59	U	60	C	61	C	62	cWW	tWH
96	HL_7EQJ_006	7EQJ	0.1241	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
97	HL_4TUE_143	4TUE	0.1729	0	T-loop with 2 stacked bulged bases	XV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	ncWW	tWH
98	HL_7UZ0_003	7UZ0	0.1760	0	T-loop with 2 stacked bulged bases	A	tRNA	G	68	U	69	U	70	C	71	G	72	A	73	G	74	U	75	C	76	cWW	tWH
99	HL_1U0B_003	1U0B	0.1645	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
100	HL_3EPH_003	3EPH	0.1694	0	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
101	HL_1N78_003	1N78	0.1591	0	T-loop with 2 stacked bulged bases	C	tRNA	G	553	U	554	U	555	C	556	G	557	A	558	U	559	U	560	C	561	cWW	tWH
102	HL_3TUP_003	3TUP	0.1769	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	ntWH
103	HL_5B63_004	5B63	0.1499	0	T-loop with 2 stacked bulged bases	D	tRNA	G	954	U	955	U	956	C	957	G	958	A	959	A	960	U	961	C	962	cWW	tWH
104	HL_3AKZ_012	3AKZ	0.1845	0	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
105	HL_6JQ6_003	6JQ6	0.2030	0	T-loop with 2 stacked bulged bases	U	Hatchet ribozyme	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
106	HL_6JQ5_001	6JQ5	0.2143	0	T-loop with 2 stacked bulged bases	A	Hatchet ribozyme	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
107	HL_6JQ5_003	6JQ5	0.2171	0	T-loop with 2 stacked bulged bases	B	Hatchet ribozyme	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
108	HL_3IGI_001	3IGI	0.1919	0	T-loop with 2 stacked bulged bases	A	Group II catalytic intron D1-D4-3	G	30	U	31	G	32	A	33	G	34	A	35	G	36	U	37	C	38	cWW	tWH
109	HL_2DVI_001	2DVI	0.1885	0	T-loop with 2 stacked bulged bases	B	tRNA (34-MER)	G	12	U	13	U	14	C	15	G	16	A	17	U	18	U	19	C	20	cWW	tWH
110	HL_3OVB_001	3OVB	0.1979	0	T-loop with 2 stacked bulged bases	C	RNA (35-MER)	G	12	U	13	U	14	C	15	A	16	A	17	G	18	U	19	C	20	cWW	tWH
111	HL_5UD5_003	5UD5	0.1656	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	A	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
112	HL_2D6F_006	2D6F	0.1718	0	T-loop with 2 stacked bulged bases	F	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	C	959	U	960	C	961	cWW	tWH
113	HL_3AM1_004	3AM1	0.2450	0	T-loop with 2 stacked bulged bases	B	ASL-truncated tRNA	G	59	U	60	U	61	C	62	G	63	A	64	U	65	U	66	C	67	cWW	tWH
114	HL_5E6M_003	5E6M	0.2182	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
115	HL_4QEI_003	4QEI	0.2392	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
116	HL_6UFH_008	6UFH	0.2556	0	T-loop with 2 stacked bulged bases	B	tRNA	G	54	U	55	U	56	C	57	A	58	A	59	G	60	U	61	C	62	cWW	tWH
117	HL_6UFG_008	6UFG	0.2036	0	T-loop with 2 stacked bulged bases	B	tRNA	G	54	U	55	U	56	C	57	A	58	A	59	G	60	U	61	C	62	cWW	tWH
118	HL_3ICQ_005	3ICQ	0.2190	0	T-loop with 2 stacked bulged bases	E	RNA (62-MER)	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
119	HL_5IBB_211	5IBB	0.3094	0	T-loop with 2 stacked bulged bases	1L	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
120	HL_5IB8_209	5IB8	0.2713	0	T-loop with 2 stacked bulged bases	1L	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
121	HL_1H4S_003	1H4S	0.2950	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	5MU	54	PSU	55	C	56	A	57	G	58	A	59	U	60	C	61	cWW	tWH
122	HL_6CFJ_108	6CFJ	0.2731	0	T-loop with 2 stacked bulged bases	1x	tRNA	G	53	5MU	54	PSU	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
123	HL_5J8B_110	5J8B	0.2503	0	T-loop with 2 stacked bulged bases	x	tRNA	G	53	5MU	54	PSU	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
124	HL_1F7U_003	1F7U	0.2419	0	T-loop with 2 stacked bulged bases	B	tRNA	G	953	5MU	954	PSU	955	C	956	A	957	1MA	958	G	959	U	960	C	961	cWW	tWH
125	HL_7VNV_003	7VNV	0.2489	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	SUR	54	PSU	55	OMC	56	7S3	57	1MA	58	G	59	U	60	C	61	cWW	tWH
126	HL_1QF6_003	1QF6	0.2725	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
127	HL_8JOZ_004	8JOZ	0.2570	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
128	HL_1IL2_003	1IL2	0.2779	0	T-loop with 2 stacked bulged bases	C	tRNA	G	953	5MU	954	PSU	955	C	956	A	957	A	958	U	959	U	960	C	961	cWW	tWH
129	HL_1FIR_003	1FIR	0.3032	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	2MU	54	PSU	55	C	56	A	57	1MA	58	G	59	U	60	C	61	cWW	tWH
130	HL_1B23_003	1B23	0.2871	0	T-loop with 2 stacked bulged bases	R	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
131	HL_3KFU_006	3KFU	0.2485	0	T-loop with 2 stacked bulged bases	L	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
132	HL_5J8B_113	5J8B	0.2863	0	T-loop with 2 stacked bulged bases	y	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
133	HL_5E81_207	5E81	0.2572	0	T-loop with 2 stacked bulged bases	1K	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
134	HL_7U2J_105	7U2J	0.2831	0	T-loop with 2 stacked bulged bases	1w	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
135	HL_4GXY_002	4GXY	0.3267	0	T-loop with 2 stacked bulged bases	A	Cobalamin riboswitch	G	49	U	50	G	51	C	52	A	53	A	54	G	55	U	56	C	57	cWW	tWH
136	HL_4WSM_211	4WSM	0.3537	0	T-loop with 2 stacked bulged bases	1K	tRNA	G	64	5MU	65	PSU	66	C	67	A	68	A	69	G	70	U	71	C	72	cWW
137	HL_2ZNI_003	2ZNI	0.3635	0	T-loop with 2 stacked bulged bases	C	bacterial tRNA	G	53	U	54	G	55	A	56	A	57	A	58	C	59	U	60	C	61	cWW	tWH
138	HL_4WSM_254	4WSM	0.3643	0	T-loop with 2 stacked bulged bases	3L	tRNA	G	64	U	65	U	66	C	67	A	68	A	69	G	70	U	71	C	72	ncWW	ntWH
139	HL_4V9K_035	4V9K	0.3794	0	T-loop with 2 stacked bulged bases	AW	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUCAAGUC	20
GUUCAAAUC	17
GUUCGAAUC	13
GUUCGAGUC	12
GUUCGAUUC	10
GUGAGAAUC	6
GUUCGAUCC	5
GUUCAAUUC	4
AUGAGAACU	3
GUUCGACUC	3
GUGCAAGUC	2
UAUUGAAGCA	2
UCUUG(1MA)AAC(A2M)	2
UCUUGAAACA	2
GUGCAACUC	2
G(5MU)(PSU)CAAAUC	2
GCGACUC	2
G(5MU)(PSU)CGAAUC	2
ACGAGAACU	1
A(PSU)GAGAA(OMC)U	1
GUGAAAAGC	1
GUGAGAACC	1
GUGAGAAGC	1
GUGCAAGCC	1
UUUUGUAUAA	1
UUUUGUAGAA	1
UCUUG(1MA)AACA	1
UCUAGAAACA	1
UUUUG(1MA)AAAA	1
G(5MU)(PSU)CGACUC	1
GU(2MU)(PSU)GAUUC	1
G(A1I9V)(PSU)CG(1MA)AUC	1
GUUCGAGCC	1
GUUCGAGAC	1
GUGAGAGUC	1
GUUAGAUUC	1
GCGAUCC	1
GCGAAUC	1
GCAGAUC	1
GCAGUC	1
G(SUR)(PSU)(OMC)(7S3)(1MA)GUC	1
G(5MU)(PSU)CAAUUC	1
G(2MU)(PSU)CA(1MA)GUC	1
GCGAGUC	1
G(5MU)(PSU)CGAUUC	1
GCGAUUC	1
G(5MU)(PSU)CAAGUC	1
GUGAAACUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCAAGU	20
UUCAAAU	17
UUCGAAU	13
UUCGAGU	12
UUCGAUU	10
UGAGAAU	6
UUCGAUC	5
UGAGAAC	4
UUCAAUU	4
CUUG(1MA)AAC	3
UUCGACU	3
(5MU)(PSU)CGACU	3
(5MU)(PSU)CGAAU	3
UGCAAGU	2
AUUGAAGC	2
CUUGAAAC	2
UGCAACU	2
(5MU)(PSU)CAAAU	2
(5MU)(PSU)CGAUU	2
CGAGAAC	1
(PSU)GAGAA(OMC)	1
UGAAAAG	1
UGAGAAG	1
UGCAAGC	1
UUUGUAUA	1
UUUGUAGA	1
CUAGAAAC	1
UUUG(1MA)AAA	1
U(2MU)(PSU)GAUU	1
(A1I9V)(PSU)CG(1MA)AU	1
UUCGAGC	1
UUCGAGA	1
UGAGAGU	1
UUAGAUU	1
(5MU)(PSU)CGAUC	1
(5MU)(PSU)CAGAU	1
(5MU)(PSU)CA(1MA)GU	1
(SUR)(PSU)(OMC)(7S3)(1MA)GU	1
(5MU)(PSU)CAAUU	1
(2MU)(PSU)CA(1MA)GU	1
(5MU)(PSU)CGAGU	1
(5MU)(PSU)CAAGU	1
UGAAACU	1

Release history

Release	4.10	4.11	4.12
Date	2026-05-20	2026-06-17	2026-07-15
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: T-loop with 2 stacked bulged bases (134)
(4)
T-loop with 2 stacked bulged bases (H) (1)
Basepair signature: cWW-tWH-F-F-F-F-F
Heat map statistics: Min 0.04 | Avg 0.26 | Max 0.63

Help

Coloring options: Nucleotide numbers

Motif HL_33597.6 Version HL_33597.6 of this group appears in releases 4.10 to 4.12 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_33597.6 Version HL_33597.6 of this group appears in releases 4.10 to 4.12

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Csv

Json