HL_4WF1_058

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

4WF1|1|BA|U|958, 4WF1|1|BA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_058 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1289

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

4WF1|1|BA|U|955
4WF1|1|BA|G|956
4WF1|1|BA|C|957
4WF1|1|BA|U|958
4WF1|1|BA|A|959
4WF1|1|BA|A|960
4WF1|1|BA|C|961
4WF1|1|BA|G|962

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L16