HL_4WF1_108
3D structure
- PDB id
- 4WF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to negamycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.09 Å
Loop
- Sequence
- GGUAACGGC
- Length
- 9 nucleotides
- Bulged bases
- 4WF1|1|CA|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WF1_108 not in the Motif Atlas
- Homologous match to HL_5J7L_006
- Geometric discrepancy: 0.0901
- The information below is about HL_5J7L_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4WF1|1|CA|G|259
4WF1|1|CA|G|260
4WF1|1|CA|U|261
4WF1|1|CA|A|262
4WF1|1|CA|A|263
4WF1|1|CA|C|264
4WF1|1|CA|G|265
4WF1|1|CA|G|266
4WF1|1|CA|C|267
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CQ
- 30S ribosomal protein S17
- Chain CT
- 30S ribosomal protein S20
Coloring options: