HL_4WF1_149

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

4WF1|1|DA|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_149 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.1531

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4WF1|1|DA|C|487
4WF1|1|DA|G|488
4WF1|1|DA|G|489
4WF1|1|DA|C|490
4WF1|1|DA|G|491
4WF1|1|DA|A|492
4WF1|1|DA|G|493

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DS

50S ribosomal protein L22