HL_4WF1_154

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CUUAACUGG

Length

9 nucleotides

Bulged bases

4WF1|1|DA|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_154 not in the Motif Atlas

Geometric match to HL_1U9S_003

Geometric discrepancy: 0.3574

The information below is about HL_1U9S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4WF1|1|DA|C|640
4WF1|1|DA|U|641
4WF1|1|DA|U|642
4WF1|1|DA|A|643
4WF1|1|DA|A|644
4WF1|1|DA|C|645
4WF1|1|DA|U|646
4WF1|1|DA|G|647
4WF1|1|DA|G|648

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L33

Chain D3

50S ribosomal protein L35