HL_4WF1_214

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GAAGCUUGCUUC

Length

12 nucleotides

Bulged bases

4WF1|1|CA|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_214 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.2833

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

4WF1|1|CA|G|79
4WF1|1|CA|A|80
4WF1|1|CA|A|81
4WF1|1|CA|G|82
4WF1|1|CA|C|83
4WF1|1|CA|U|84
4WF1|1|CA|U|85
4WF1|1|CA|G|86
4WF1|1|CA|C|87
4WF1|1|CA|U|88
4WF1|1|CA|U|89
4WF1|1|CA|C|90

Current chains

Chain CA

16S rRNA

Nearby chains